SkullTo3d
0.1
Github
Site
Installation
Dependancies
External software dependancies
Python packages dependancies
Creating environment with all packages
Install skullTo3d package
from github
Using git
Using pip
from pypi
Testing the install
Container install
Dockerfile
Docker image
Note on Singularity
Quick test
Download datasets
Testing depending on the installation
Testing from Singularity image
Testing from docker image
Testing from python package install
From pip install
From github install
Testing the macaque datasets with CT and petra
Testing from Singularity image
Macaque CT petra
Launching a processing
Commands
Expected input data
Command line parameters
mandatory parameters
exclusive parameters
optional parameters
more optional parameters
The following parameters are optional
Command line examples
Derivatives
Introduction
Data Preparation (Padded files)
Petra Skull extraction
T1w Skull extraction
CT Skull extraction
Parameters
Adding -params
Advanced parameters settings
Individual Parameters
Adding -indiv
Advanced parameters settings
Page
Installation
Container install
Quick test
Launching a processing
Derivatives
Parameters
Individual Parameters
Installation
Container install
Quick test
Launching a processing
Derivatives
Parameters
Individual Parameters
Index