Macapype

Macapype is an open-source multi-modal brain data analysis kit which provides Python-based pipelines for advanced multi-thread processing of MRI anatomical data of NPH brain images. Macapype is based on Nipype, a tool developed in fMRI field, which facilitates data analyses by wrapping many commonly-used neuro-imaging software into a common python framework.

API, describing the different pipelines and nodes, can be found here

_images/logo_macapype.png

Forum macapype_users

The macapype_users can be be found here (requires a framateam/framagit account, but should be accessible with a github or bitbucket account)

Installation

See Installation for installation on your local system if you have adequate softwares (i.e. FSL, AFNI, Ants, SPM) running on your machine/clusters.

Docker

A Dockerfile, and a docker image are also available, explanations can be found here

Workflows

Running workflows can be found here

Tutorial

Explanations on how to modify the processing can be found here

Explanations of the various pipelines are found here

Examples

Several examples can be found here

Contributing

Some advices on how to contribute to the source code can be found here