Individual Parameters

Adding -indiv

You can include “-indiv indiv_params.json” in the python command, for specifiying parameters specific parameters:

$ python workflows/segment_pnh.py -data ~/Data_maca -out ./local_test -soft SPM -params params.json -indiv indiv_params.json

Here is an example of the params.json corresponding to segment_pnh_spm_based pipeline:

{
    "sub-032195":
    {
        "ses-001":
        {
            "crop_T1":
            {
                "args": "put your values here"
            }
        }
    }
}