Installation¶

Dependancies¶

External software dependancies¶

SkullTo3d relies heavily on other neuroimaging Softwares, predominentyly:

Python packages dependancies¶

SkullTo3d relies on python packages. Here we provide installations using Anaconda

Creating environment with all packages¶

In case you have access to a conda environment, here is the procedure to initialize your own environnment (called “macapype”, but can be called the name you prefer):

$ conda init bash
$ conda create -n macapype_env python=3.10
$ conda activate macapype_env

Install macapype package¶

from github¶

Using git¶

$ git clone https://github.com/Macatools/macapype.git
$ cd macapype
$ python setup.py develop --user

Using pip¶

$ pip install git+https://github.com/Macatools/macapype

from pypi¶

SkullTo3d is available on * pypi.org:

If ‘pip’ package is installed on your system, you can install the lastest stable version with:

$ pip install macapype

From conda¶

SkullTo3d is also available on Anaconda cloud:

If ‘conda’ (Anaconda, or miniconda) is installed on your system, you can type:

$ conda install -c macatools macapype

!!!! The latest versions of macapype (from > 0.2.1) are not available, due to the inclusion of packages that are not yet packaged in conda use “pip install macapype” or “git clone https://github.com/Macatools/macapype.git” till further notice

Testing the install¶

$ ipython

In [1]: import macapype; print (macapype.__version__)