Index

_

__init__() (macapype.nodes.correct_bias.T1xT2BiasFieldCorrection method) (macapype.nodes.extract_brain.AtlasBREX method) (macapype.nodes.extract_brain.T1xT2BET method) (macapype.nodes.prepare.CropVolume method) (macapype.nodes.register.IterREGBET method) (macapype.nodes.register.NMTSubjectAlign method) (macapype.nodes.register.NMTSubjectAlign2 method) (macapype.nodes.segment.AtroposN4 method) (macapype.nodes.surface.Meshify method)

_create_mapnode_prep_pipeline() (in module macapype.pipelines.prepare) _create_prep_pipeline() (in module macapype.pipelines.prepare) _create_split_hemi_pipe() (in module macapype.pipelines.surface)

A

AtlasBREX (class in macapype.nodes.extract_brain)

AtroposN4 (class in macapype.nodes.segment)

C

create_brain_extraction_pipe() (in module macapype.pipelines.full_pipelines) create_brain_extraction_T1_pipe() (in module macapype.pipelines.full_pipelines) create_brain_segment_from_mask_pipe() (in module macapype.pipelines.full_pipelines) create_brain_segment_from_mask_T1_pipe() (in module macapype.pipelines.full_pipelines) create_correct_bias_pipe() (in module macapype.pipelines.correct_bias) create_extract_pipe() (in module macapype.pipelines.extract_brain) create_extract_T1_pipe() (in module macapype.pipelines.extract_brain) create_full_ants_subpipes() (in module macapype.pipelines.full_pipelines) create_full_spm_subpipes() (in module macapype.pipelines.full_pipelines) create_full_T1_ants_subpipes() (in module macapype.pipelines.full_pipelines)

create_long_multi_preparation_pipe() (in module macapype.pipelines.prepare) create_long_single_preparation_pipe() (in module macapype.pipelines.prepare) create_masked_correct_bias_pipe() (in module macapype.pipelines.correct_bias) create_nii_to_mesh_fs_pipe() (in module macapype.pipelines.surface) create_nii_to_mesh_pipe() (in module macapype.pipelines.surface) create_old_segment_pipe() (in module macapype.pipelines.segment) create_register_NMT_pipe() (in module macapype.pipelines.register) create_segment_atropos_pipe() (in module macapype.pipelines.segment) create_short_preparation_pipe() (in module macapype.pipelines.prepare) create_short_preparation_T1_pipe() (in module macapype.pipelines.prepare) CropVolume (class in macapype.nodes.prepare)

I

IterREGBET (class in macapype.nodes.register)

L

load_test_data() (in module macapype.utils.utils_tests)

M

Meshify (class in macapype.nodes.surface)

N

NMTSubjectAlign (class in macapype.nodes.register)

NMTSubjectAlign2 (class in macapype.nodes.register)

T

T1xT2BET (class in macapype.nodes.extract_brain)

T1xT2BiasFieldCorrection (class in macapype.nodes.correct_bias)