macapype.pipelines.full_pipelines.create_full_ants_subpipes

macapype.pipelines.full_pipelines.create_full_ants_subpipes(params_template, params={}, name='full_ants_subpipes', mask_file=None, space='native', pad=False)

Description: Segment T1 (using T2 for bias correction) .

Params:

• short_data_preparation_pipe (see create_short_preparation_pipe) or long_single_preparation_pipe (see create_long_single_preparation_pipe) or long_multi_preparation_pipe (see create_long_multi_preparation_pipe)

• brain_extraction_pipe (see create_brain_extraction_pipe)

• brain_segment_pipe (see create_brain_segment_from_mask_pipe)

• nii_to_mesh_pipe (see create_nii_to_mesh_pipe)

Inputs:

inputnode:

list_T1:

preprocessed T1 file name

list_T2:

preprocessed T2 file name

indiv_params (opt):

dict with individuals parameters for some nodes

arguments:

params_template:

dictionary of template files

params:

dictionary of node sub-parameters (from a json file)

name:

pipeline name (default = “full_segment_pipe”)

Outputs:

brain_mask

segmented_brain_mask:

indexed with tissue classes