macapype.pipelines.full_pipelines.create_brain_extraction_pipe

macapype.pipelines.full_pipelines.create_brain_extraction_pipe(params_template, params={}, name='brain_extraction_pipe')

Description: Brain extraction with atlas-brex after debiasing

Params:

• correct_bias_pipe (see create_correct_bias_pipe)

• extract_pipe (see create_extract_pipe <macapype.pipeline. extract_brain.create_extract_pipe>)

Inputs:

inputnode:

preproc_T1:

preprocessed T1 file

preproc_T2:

preprocessed T2 file

indiv_params (opt):

dict with individuals parameters for some nodes

arguments:

params_template:

dictionary of template files

params:

dictionary of node sub-parameters (from a json file)

name:

pipeline name (default = “full_segment_pipe”)

Outputs: