macapype.pipelines.prepare.create_short_preparation_T1_pipe

macapype.pipelines.prepare.create_short_preparation_T1_pipe(params, name='short_preparation_T1_pipe')[source]

Description: T1 only short preparation

Processing steps:

  • T1s and T2s are averaged (by modality).

  • reorient (opt: reorient) makes the whole pipeline more neat)

  • Cropped (bet_crop include alignement, and mask generation)

  • denoising all images (no denoise_first)

Params:

Inputs:

inputnode:

list_T1:

T1 files (from BIDSDataGrabber)

indiv_params (opt):

dict with individuals parameters for some nodes

arguments:

params:

dictionary of node sub-parameters (from a json file)

name:

pipeline name (default = “long_multi_preparation_pipe”)

Outputs:

outputnode:

preproc_T1:

preprocessed T1 file