macapype.pipelines.extract_brain.create_extract_T1_pipe

macapype.pipelines.extract_brain.create_extract_T1_pipe(params_template, params={}, name='extract_T1_pipe')[source]

Description: Extract T1 brain using AtlasBrex

Params:

Inputs:

inputnode:

restore_T1:

preprocessed (debiased/denoised) T1 file name

arguments:

params_template:

dictionary of info about template

params:

dictionary of node sub-parameters (from a json file)

name:

pipeline name (default = “extract_pipe”)

Outputs:

smooth_mask.out_file:

Computed mask (after some smoothing)